PUBLICATIONS (BIOLOGY)

Brunet, E., Rouzine, I.M., and Wilke, C.O. The stochastic edge in adaptive evolution. Genetics 179, 603-620, 2008

Dutta, R.N., Rouzine, I.M., Smith, S.D., Wilke, C.O., and Novella, I.S. Rapid adaptive amplification of preexisting variation in an RNA virus. J. Virol. 82, 4354-4362, 2008

Rouzine, I.M., Brunet, E., and Wilke, C.O. The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation. Theor. Popul. Biol. 73, 24-46, 2008

Gheorghiu-Svirschevski, S., Rouzine, I.M., and Coffin, J.M. (2007) Increasing sequence correlations limits the efficiency of recombination in a multi-site evolution model. Mol. Bio. Evol. 254, 574-586

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Rouzine, I.M., and Coffin, J.M. Highly fit ancestors of partly sexual populations (2007) Theor. Pop. Bio. 71, 239-150

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Rouzine, I.M., Sergeev, R.A., and Glushtsov, A.I. (2006) Two types of cytotoxic lymphocyte regulation explain kinetics of immune response to human immunodeficiency virus. Proc. Nat. Acad. Sci. 103, 666-671

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Rouzine, I.M., and Coffin, J.M. (2005) Evolution of HIV under selection and weak recombination. Genetics 170, 7-18.

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Rouzine, I.M., Murali-Krishna, K., and Ahmed, R. (2005) Regulation  of primary cytotoxic response by antigen-presenting cells. J. Comp. Appl. Math. 184, 258-274.

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Rouzine, I.M., and Mc Kenzie F.E. (2003) Link between immune response and parasite synchronization in malaria. Proc. Nat. Acad. Sci. 100, 3473-3478.

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Rouzine, I.M., Wakeley, J., and Coffin, J.M. (2003) The solitary wave of asexual evolution. Proc. Nat. Acad. Sci. 96, 587-592.

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Rouzine, I.M., and Coffin, J.M. (2001) Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology. Microbio. Mol. Bio. Rev. 65, 151-185.

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Rouzine, I.M. and Coffin, J.M. (1999) Linkage disequilibrium test implies a large effective population number for HIV in vivo. Proc. Nat. Acad. Sci. 96, 10758-10763.

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Rouzine, I.M. and Coffin, J.M. (1999) T cell turnover in SIV infection. Science 284, 555b.

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Rouzine, I.M. and Coffin, J.M. (1999) Search for the mechanism of evolution in the pro gene of HIV in vivo. J. Virol. 73, 8167-8178.

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Rouzine, I.M. and Coffin, J.M. (1999) Interplay between experiment and theory in development of a working model for HIV-1 population dynamics, in: Origin and Evolution of Viruses, eds. E.Domingo, R.Webster and J.Holland, Academic, London, 1999, pp.225-262.